PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA012408-PA
Common NameOsI_11133
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family Trihelix
Protein Properties Length: 238aa    MW: 25426.1 Da    PI: 10.1329
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA012408-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix28.34.6e-0920102284
          trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                       W++ e+ aLi+a   ++ + +rg l +++W++ ++++      + r  +r+  +C+ + + l+ ryk++ +          s +++f++
  BGIOSGA012408-PA  20 WSDGETAALIDAWDPLHVARSRGPLPAKDWRAAASAVnarraaAGRRHNRTRARCRARVQTLKERYKRELAKPPP------SGWRHFSR 102
                       ***************************************999888889*******************98665553......24555555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.7E-1518105No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MSSSKPSPQQ QQQQRANEWW SDGETAALID AWDPLHVARS RGPLPAKDWR AAASAVNARR  60
AAAGRRHNRT RARCRARVQT LKERYKRELA KPPPSGWRHF SRLQEFLLSG PPPGFPPKTM  120
PPASVKKEEE ECQDEAVGGG GGSGGLLGRW GCPDEAEERG RGVVPGGGGG DEAGRGVRAR  180
GVGEAGSGGE GGDGDGEGHA GSRQAEGGEA GHLNTYGMDV VARAMLSMIT ERRRRTQY
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154524300.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629493.12e-69PREDICTED: trihelix transcription factor ASIL1
TrEMBLA2XFJ51e-170A2XFJ5_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA012408-PA1e-169(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147531213